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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the LICENSE file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* Purpose: The public header file for the subfiling driver. */ #ifndef H5FDsubfiling_H #define H5FDsubfiling_H /* Public header files */ #include "H5FDpublic.h" /* File drivers */ #ifdef H5_HAVE_SUBFILING_VFD /** * \def H5FD_SUBFILING * Macro that returns the identifier for the #H5FD_SUBFILING driver. \hid_t{file driver} */ #define H5FD_SUBFILING (H5OPEN H5FD_SUBFILING_id_g) #else #define H5FD_SUBFILING (H5I_INVALID_HID) #endif /** * \def H5FD_SUBFILING_NAME * The canonical name for the #H5FD_SUBFILING driver */ #define H5FD_SUBFILING_NAME "subfiling" #ifdef H5_HAVE_SUBFILING_VFD #ifndef H5FD_SUBFILING_FAPL_MAGIC /** * \def H5FD_SUBFILING_CURR_FAPL_VERSION * The version number of the H5FD_subfiling_config_t configuration * structure for the #H5FD_SUBFILING driver */ #define H5FD_SUBFILING_CURR_FAPL_VERSION 1 /** * \def H5FD_SUBFILING_FAPL_MAGIC * Unique number used to distinguish the #H5FD_SUBFILING driver from other HDF5 file drivers */ #define H5FD_SUBFILING_FAPL_MAGIC 0xFED01331 #endif /** * \def H5FD_SUBFILING_DEFAULT_STRIPE_SIZE * The default stripe size (in bytes) for data stripes in subfiles */ #define H5FD_SUBFILING_DEFAULT_STRIPE_SIZE (32 * 1024 * 1024) /** * \def H5FD_SUBFILING_DEFAULT_STRIPE_COUNT * Macro for the default Subfiling stripe count value. The default * is currently to use one subfile per node. */ #define H5FD_SUBFILING_DEFAULT_STRIPE_COUNT -1 /** * \def H5FD_SUBFILING_FILENAME_TEMPLATE * The basic printf-style template for a #H5FD_SUBFILING driver * subfile filename. The format specifiers correspond to: * * \par \%s * base filename, e.g. "file.h5" * * \par \%PRIu64 * file inode, e.g. 11273556 * * \par \%0*d * number (starting at 1) signifying the Nth (out of * total number of subfiles) subfile. Zero-padded * according to the number of digits in the number of * subfiles (calculated by log10(num_subfiles) + 1) * * \par \%d * number of subfiles * * yielding filenames such as: * * file.h5.subfile_11273556_01_of_10 \n * file.h5.subfile_11273556_02_of_10 \n * file.h5.subfile_11273556_10_of_10 \n */ #define H5FD_SUBFILING_FILENAME_TEMPLATE "%s.subfile_%" PRIu64 "_%0*d_of_%d" /** * \def H5FD_SUBFILING_CONFIG_FILENAME_TEMPLATE * The basic printf-style template for a #H5FD_SUBFILING driver * configuration filename. The format specifiers correspond to: * * \par \%s * base filename, e.g. "file.h5" * * \par \%PRIu64 * file inode, e.g. 11273556 * * yielding a filename such as: * * file.h5.subfile_11273556.config */ #define H5FD_SUBFILING_CONFIG_FILENAME_TEMPLATE "%s.subfile_%" PRIu64 ".config" /* * Environment variables interpreted by the HDF5 Subfiling feature */ /** * \def H5FD_SUBFILING_STRIPE_SIZE * Macro for name of the environment variable that specifies the size * (in bytes) for data stripes in subfiles * * The value set for this environment variable is interpreted as a * long long value and must be > 0. */ #define H5FD_SUBFILING_STRIPE_SIZE "H5FD_SUBFILING_STRIPE_SIZE" /** * \def H5FD_SUBFILING_IOC_PER_NODE * Macro for name of the environment variable that specifies the number * of MPI ranks per node to use as I/O concentrators * * The value set for this environment variable is interpreted as a * long value and must be > 0. */ #define H5FD_SUBFILING_IOC_PER_NODE "H5FD_SUBFILING_IOC_PER_NODE" /** * \def H5FD_SUBFILING_IOC_SELECTION_CRITERIA * Macro for name of the environment variable that provides information * for selection MPI ranks as I/O concentrators * * The value set for this environment variable is interpreted differently, * depending on the IOC selection method chosen. * * For #SELECT_IOC_ONE_PER_NODE, this value is ignored. * * For #SELECT_IOC_EVERY_NTH_RANK, this value is interpreted as a * long value and must be > 0. The value will correspond to the * `N` value when selecting every `N`-th MPI rank as an I/O * concentrator. * * For #SELECT_IOC_WITH_CONFIG, this value is ignored as that particular * IOC selection method is not currently supported. * * For #SELECT_IOC_TOTAL, this value is interpreted as a long value * and must be > 0. The value will correspond to the total number * of I/O concentrators to be used. */ #define H5FD_SUBFILING_IOC_SELECTION_CRITERIA "H5FD_SUBFILING_IOC_SELECTION_CRITERIA" /** * \def H5FD_SUBFILING_SUBFILE_PREFIX * Macro for name of the environment variable that specifies a prefix * to apply to the filenames generated for subfiles * * The value set for this environment variable is interpreted as a * pathname. */ #define H5FD_SUBFILING_SUBFILE_PREFIX "H5FD_SUBFILING_SUBFILE_PREFIX" /** * \def H5FD_SUBFILING_CONFIG_FILE_PREFIX * Macro for name of the environment variable that specifies a prefix * to apply to the subfiling configuration filename. Useful for cases * where the application wants to place the configuration file in a * different directory than the default of putting it alongside the * generated subfiles. For example, when writing to node-local storage * one may wish to place the configuration file on a scratch file * system readable by all nodes, while the subfiles are initially * written to the node-local storage. * * The value set for this environment variable is interpreted as a * pathname that must already exist. * * NOTE: As this prefix string will be encoded in the driver info * message that gets written to the file, there is an upper * limit of about ~900 single-byte characters for this string, * though possibly less due to other information the driver * may encode. Avoid long prefix names where possible. */ #define H5FD_SUBFILING_CONFIG_FILE_PREFIX "H5FD_SUBFILING_CONFIG_FILE_PREFIX" /** * \enum H5FD_subfiling_ioc_select_t * This enum defines the various constants to allow different * allocations of MPI ranks as I/O concentrators. * * \var SELECT_IOC_ONE_PER_NODE * Default selection method. One MPI rank per node is used as an * I/O concentrator. If this selection method is used, the number * of I/O concentrators per node can be adjusted with the * #H5FD_SUBFILING_IOC_PER_NODE environment variable. * * \var SELECT_IOC_EVERY_NTH_RANK * Starting with MPI rank 0, a stride of 'N' is applied to the MPI * rank values to determine the next I/O concentrator. The * #H5FD_SUBFILING_IOC_SELECTION_CRITERIA environment variable must * be set to the value desired for 'N'. * * \var SELECT_IOC_WITH_CONFIG * Currently unsupported. Use a configuration file to determine * the mapping from MPI ranks to I/O concentrators. The * #H5FD_SUBFILING_IOC_SELECTION_CRITERIA environment variable must * be set to the path to the configuration file. * * \var SELECT_IOC_TOTAL * Specifies that a total of 'N' I/O concentrators should be used. * Starting with MPI rank 0, a stride of 'MPI comm size' / 'N' is * applied to the MPI rank values to determine the next I/O * concentrator. The #H5FD_SUBFILING_IOC_SELECTION_CRITERIA * environment variable must be set to the value desired for 'N'. * * \var ioc_selection_options * Unused. Sentinel value */ typedef enum { SELECT_IOC_ONE_PER_NODE = 0, /* Default */ SELECT_IOC_EVERY_NTH_RANK, /* Starting at rank 0, select-next += N */ SELECT_IOC_WITH_CONFIG, /* NOT IMPLEMENTED: Read-from-file */ SELECT_IOC_TOTAL, /* Starting at rank 0, mpi_size / total */ ioc_selection_options /* Sentinel value */ /* NOTE: Add to the Fortran constants (H5f90global.F90) when adding new entries */ } H5FD_subfiling_ioc_select_t; /** * \struct H5FD_subfiling_params_t * \brief Subfiling parameter structure that is shared between the #H5FD_SUBFILING * and #H5FD_IOC drivers * * \var H5FD_subfiling_ioc_select_t H5FD_subfiling_params_t::ioc_selection * The method to use for selecting MPI ranks to be I/O concentrators. The * current default is to select one MPI rank per node to be an I/O concentrator. * Refer to #H5FD_subfiling_ioc_select_t for a description of the algorithms * available for use. * * \var int64_t H5FD_subfiling_params_t::stripe_size * The stripe size defines the size (in bytes) of the data stripes in the * subfiles for the logical HDF5 file. Data is striped across the subfiles * in a round-robin wrap-around fashion in segments equal to the stripe size. * * For example, in an HDF5 file consisting of four subfiles with a 1MiB stripe * size, the first and fifth 1MiB of data would reside in the first subfile, * the second and sixth 1MiB of data would reside in the second subfile and so * on. * * This value can also be set or adjusted with the #H5FD_SUBFILING_STRIPE_SIZE * environment variable. * * \var int32_t H5FD_subfiling_params_t::stripe_count * The target number of subfiles to use for the logical HDF5 file. The current * default is to use one subfile per node, but it can be useful to set a * different target number of subfiles, especially if the HDF5 application will * pre-create the HDF5 file on a single MPI rank. In that particular case, the * single rank will need to know how many subfiles the logical HDF5 file will * consist of in order to properly pre-create the file. * * This value is used in conjunction with the IOC selection method to determine * which MPI ranks will be assigned as I/O concentrators. Alternatively, the * mapping between MPI ranks and I/O concentrators can be set or adjusted with a * combination of the #ioc_selection field and the #H5FD_SUBFILING_IOC_PER_NODE * and #H5FD_SUBFILING_IOC_SELECTION_CRITERIA environment variables. */ typedef struct H5FD_subfiling_params_t { H5FD_subfiling_ioc_select_t ioc_selection; /* Method to select I/O concentrators */ int64_t stripe_size; /* Size (in bytes) of data stripes in subfiles */ int32_t stripe_count; /* Target number of subfiles to use */ } H5FD_subfiling_params_t; //! /** * \struct H5FD_subfiling_config_t * \brief Configuration structure for H5Pset_fapl_subfiling() / H5Pget_fapl_subfiling() * * \details H5FD_subfiling_config_t is a public structure that is used to pass * subfiling configuration data to the #H5FD_SUBFILING driver via * a File Access Property List. A pointer to an instance of this structure * is a parameter to H5Pset_fapl_subfiling() and H5Pget_fapl_subfiling(). * * \var uint32_t H5FD_subfiling_config_t::magic * A somewhat unique number which distinguishes the #H5FD_SUBFILING driver * from other drivers. Used in combination with a version number, it can * help to validate a user-generated File Access Property List. This field * should be set to #H5FD_SUBFILING_FAPL_MAGIC. * * \var uint32_t H5FD_subfiling_config_t::version * Version number of the H5FD_subfiling_config_t structure. Any instance * passed to H5Pset_fapl_subfiling() / H5Pget_fapl_subfiling() must have * a recognized version number or an error will be raised. Currently, this * field should be set to #H5FD_SUBFILING_CURR_FAPL_VERSION. * * \var hid_t H5FD_subfiling_config_t::ioc_fapl_id * The File Access Property List which is setup with the file driver that * the #H5FD_SUBFILING driver will use for servicing I/O requests to the * subfiles. Currently, the File Access Property List must be setup with * the #H5FD_IOC driver by calling H5Pset_fapl_ioc(), but future development * may allow other file drivers to be used. * * \var bool H5FD_subfiling_config_t::require_ioc * A boolean flag which indicates whether the #H5FD_SUBFILING driver should * use the #H5FD_IOC driver for its I/O operations. This field should currently * always be set to true. * * \var H5FD_subfiling_params_t H5FD_subfiling_config_t::shared_cfg * A structure which contains the subfiling parameters that are shared between * the #H5FD_SUBFILING and #H5FD_IOC drivers. This includes the subfile stripe * size, stripe count, IOC selection method, etc. * */ typedef struct H5FD_subfiling_config_t { uint32_t magic; /* Must be set to H5FD_SUBFILING_FAPL_MAGIC */ uint32_t version; /* Must be set to H5FD_SUBFILING_CURR_FAPL_VERSION */ hid_t ioc_fapl_id; /* The FAPL setup with the stacked VFD to use for I/O concentrators */ bool require_ioc; /* Whether to use the IOC VFD (currently must always be true) */ H5FD_subfiling_params_t shared_cfg; /* Subfiling/IOC parameters (stripe size, stripe count, etc.) */ } H5FD_subfiling_config_t; //! #ifdef __cplusplus extern "C" { #endif /** @private * * \brief ID for the SUBFILING VFD */ H5_DLLVAR hid_t H5FD_SUBFILING_id_g; /** * \ingroup FAPL * * \brief Modifies the specified File Access Property List to use the #H5FD_SUBFILING driver * * \fapl_id * \param[in] vfd_config Pointer to #H5FD_SUBFILING driver configuration structure. May be NULL. * \returns \herr_t * * \details H5Pset_fapl_subfiling() modifies the File Access Property List to use the * #H5FD_SUBFILING driver. * * The #H5FD_SUBFILING driver is an MPI-based file driver that allows an * HDF5 application to distribute a logical HDF5 file across a collection * of "subfiles" in equal-sized data segment "stripes". I/O to the logical * HDF5 file is then directed to the appropriate "subfile" according to the * #H5FD_SUBFILING configuration and a system of I/O concentrators, which * are MPI ranks operating worker threads. * * By allowing a configurable stripe size, number of I/O concentrators and * method for selecting MPI ranks as I/O concentrators, the #H5FD_SUBFILING * driver aims to enable an HDF5 application to find a middle ground between * the single shared file and file-per-process approaches to parallel file I/O * for the particular machine the application is running on. In general, the * goal is to avoid some of the complexity of the file-per-process approach * while also minimizing the locking issues of the single shared file approach * on a parallel file system. * * \note Since the #H5FD_SUBFILING driver is an MPI-based file driver, the HDF5 * application should ensure that H5Pset_mpi_params() is called before this * routine so that the appropriate MPI communicator and info objects will be * setup for use by the #H5FD_SUBFILING and #H5FD_IOC drivers. * * \note The current architecture of the #H5FD_SUBFILING driver requires that the * HDF5 application must have been initialized with MPI_Init_thread() using * a value of MPI_THREAD_MULTIPLE for the thread support level. * * \note The \p vfd_config parameter may be NULL. In this case, the reference * implementation I/O concentrator VFD will be used with the default settings * of one I/O concentrator per node and a stripe size of 32MiB. Refer to the * H5FD_subfiling_config_t documentation for information about configuration * for the #H5FD_SUBFILING driver. * * \since 1.14.0 * */ H5_DLL herr_t H5Pset_fapl_subfiling(hid_t fapl_id, const H5FD_subfiling_config_t *vfd_config); /** * \ingroup FAPL * * \brief Queries a File Access Property List for #H5FD_SUBFILING file driver properties * * \fapl_id * \param[out] config_out Pointer to H5FD_subfiling_config_t structure through which the * #H5FD_SUBFILING file driver properties will be returned. * * \returns \herr_t * * \details H5Pget_fapl_subfiling() queries the specified File Access Property List for * #H5FD_SUBFILING driver properties as set by H5Pset_fapl_subfiling(). If the * #H5FD_SUBFILING driver has not been set on the File Access Property List, a * default configuration is returned. An HDF5 application may use this * functionality to manually configure the #H5FD_SUBFILING driver by calling * H5Pget_fapl_subfiling() on a newly-created File Access Property List, adjusting * the default values and then calling H5Pset_fapl_subfiling() with the configured * H5FD_subfiling_config_t structure. * * The `ioc_fapl_id` field of the returned structure will be the ID of a copied or * newly-created property list which should be closed with H5Pclose() when the * configuration structure is no longer in use. An application should also be sure to * close this property list ID first if a different property list ID will be assigned * to the `ioc_fapl_id` field. * * \note H5Pget_fapl_subfiling() returns the #H5FD_SUBFILING driver properties as they * were initially set for the File Access Property List using H5Pset_fapl_subfiling(). * Alternatively, the driver properties can be modified at runtime according to values * set for the #H5FD_SUBFILING_STRIPE_SIZE, #H5FD_SUBFILING_IOC_PER_NODE and * #H5FD_SUBFILING_IOC_SELECTION_CRITERIA environment variables. However, driver * properties set through environment variables will not be reflected in what is * returned by H5Pget_fapl_subfiling(), so an application may need to check those * environment variables to get accurate values for the #H5FD_SUBFILING driver * properties. * * \since 1.14.0 * */ H5_DLL herr_t H5Pget_fapl_subfiling(hid_t fapl_id, H5FD_subfiling_config_t *config_out); /** * \ingroup H5VFD * * \brief Retrieve the subfile names for an HDF5 file using the subfiling VFD * * \file_id{file_id} * * \param[out] filenames Pointer to an array of C strings containing the subfile names. * Memory is allocated by the function and must be freed by the caller. * \param[out] len Pointer to the number of subfiles in the \p filenames array. * * \returns \herr_t * * \details H5FDsubfiling_get_file_mapping() retrieves the names of all physical subfiles * that collectively make up a logical HDF5 file using the subfiling Virtual File * Driver (VFD). The subfiling VFD distributes file data across multiple subfiles * to improve parallel I/O performance, particularly systems where metadata operations * can become a bottleneck. * * The function returns an array of subfile names corresponding to the physical files * stored on the file system. Each MPI rank may be responsible for different subfiles, * and this function provides visibility into which subfiles are associated with the * calling rank. * * **Typical use cases include:** * - **File management**: Understanding the physical storage layout for backup and archival * - **Performance analysis**: Identifying subfile distribution patterns * - **File fusion**: Providing subfile lists to tools like h5fuse for recombining files * - **Debugging**: Troubleshooting subfiling configuration and I/O patterns * - **Storage optimization**: Analyzing subfile sizes and distribution * * \note * \parblock * **Memory management**: The caller must call H5free_memory() on each string in the * \p filenames array, and then call H5free_memory() on the \p filenames array itself: * \code{.c} * for (size_t i = 0; i < len; i++) { * H5free_memory(filenames[i]); * } * H5free_memory(filenames); * \endcode * \endparblock * * \note * \parblock * **VFD requirement**: This function only works with files that use the subfiling VFD. * Calling it on files using other VFDs will result in an error. This function will not * be accessible if support for the subfiling VFD is unavailable or disabled. * \endparblock * * \note * \parblock * **MPI context**: The function returns subfiles associated with the calling MPI rank. * Different ranks may receive different subfile lists depending on the subfiling * configuration and I/O concentrator (IOC) assignment. * \endparblock * * \note * \parblock * \warning * \endparblock * * \par Example * \code{.c} * #include "hdf5.h" * * hid_t file_id; * char **subfile_names = NULL; * size_t num_subfiles; * herr_t ret; * * // Open file with subfiling VFD (setup not shown) * // ... * * // Get subfile mapping * ret = H5FDsubfiling_get_file_mapping(file_id, &subfile_names, &num_subfiles); * if (ret >= 0) { * printf("Found %zu subfiles:\n", num_subfiles); * for (size_t i = 0; i < num_subfiles; i++) { * printf(" %s\n", subfile_names[i]); * H5free_memory(subfile_names[i]); // Free each string * } * H5free_memory(subfile_names); // Free the array * } else { * printf("Error getting file mapping\n"); * } * \endcode * * \see H5Pset_fapl_subfiling() * \see H5Pget_fapl_subfiling() * \see H5free_memory() * * \since 2.0.0 * */ H5_DLL herr_t H5FDsubfiling_get_file_mapping(hid_t file_id, char ***filenames, size_t *len); #ifdef __cplusplus } #endif #endif /* H5_HAVE_SUBFILING_VFD */ #endif /* H5FDsubfiling_H */