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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the LICENSE file, which can be found at the root of the source code * * distribution tree, or in https://www.hdfgroup.org/licenses. * * If you do not have access to either file, you may request a copy from * * help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ /* * Purpose: The public header file for the MPI-I/O (mpio) virtual file driver (VFD) */ #ifndef H5FDmpio_H #define H5FDmpio_H /* Public header files */ #include "H5FDpublic.h" /* File drivers */ #ifdef H5_HAVE_PARALLEL /** ID for the mpio VFD */ #define H5FD_MPIO (H5OPEN H5FD_MPIO_id_g) #else /** Initializer for the mpio VFD (disabled) */ #define H5FD_MPIO (H5I_INVALID_HID) #endif #ifdef H5_HAVE_PARALLEL #if defined(H5F_DEBUG) && !defined(H5FDmpio_DEBUG) /** Turn mpio VFD debugging on (requires H5F_DEBUG) */ #define H5FDmpio_DEBUG #endif #ifdef __cplusplus extern "C" { #endif /* Global var whose value comes from environment variable */ /* (Defined in H5FDmpio.c) */ H5_DLLVAR bool H5FD_mpi_opt_types_g; /** @private * * \brief ID for the mpio VFD */ H5_DLLVAR hid_t H5FD_MPIO_id_g; /** * \ingroup FAPL * * \brief Stores MPI IO communicator information to the file access property list * * \fapl_id * \param[in] comm MPI communicator * \param[in] info MPI info object * \returns \herr_t * * \details H5Pset_fapl_mpio() stores the user-supplied MPI IO parameters \p * comm, for communicator, and \p info, for information, in the file * access property list \p fapl_id. That property list can then be used * to create and/or open a file. * * H5Pset_fapl_mpio() is available only in the parallel HDF5 library * and is not a collective function. * * \p comm is the MPI communicator to be used for file open, as defined * in \c MPI_File_open of MPI. This function makes a duplicate of the * communicator, so modifications to \p comm after this function call * returns have no effect on the file access property list. * * \p info is the MPI Info object to be used for file open, as defined * in MPI_File_open() of MPI. This function makes a duplicate copy of * the Info object, so modifications to the Info object after this * function call returns will have no effect on the file access * property list. * * If the file access property list already contains previously-set * communicator and Info values, those values will be replaced and the * old communicator and Info object will be freed. * * \note Raw dataset chunk caching is not currently supported when using this * file driver in read/write mode. All calls to H5Dread() and H5Dwrite() * will access the disk directly, and H5Pset_cache() and * H5Pset_chunk_cache() will have no effect on performance.\n * Raw dataset chunk caching is supported when this driver is used in * read-only mode. * * \version 1.4.5 Handling of the MPI Communicator and Info object changed at * this release. A duplicate of each of these is now stored in the property * list instead of pointers to each. * \since 1.4.0 * */ H5_DLL herr_t H5Pset_fapl_mpio(hid_t fapl_id, MPI_Comm comm, MPI_Info info); /** * \ingroup FAPL * * \brief Returns MPI IO communicator information * * \fapl_id * \param[out] comm MPI communicator * \param[out] info MPI info object * \returns \herr_t * * \details If the file access property list is set to the #H5FD_MPIO driver, * H5Pget_fapl_mpio() returns duplicates of the stored MPI communicator * and Info object through the \p comm and \p info pointers, if those * values are non-null. * * Since the MPI communicator and Info object are duplicates of the * stored information, future modifications to the access property list * will not affect them. It is the responsibility of the application to * free these objects. * * \version 1.4.5 Handling of the MPI Communicator and Info object changed at * this release. A duplicate of each of these is now stored in the * property list instead of pointers to each. * \since 1.4.0 * */ H5_DLL herr_t H5Pget_fapl_mpio(hid_t fapl_id, MPI_Comm *comm /*out*/, MPI_Info *info /*out*/); /** * \ingroup DXPL * * \brief Sets data transfer mode * * \dxpl_id * \param[in] xfer_mode Transfer mode * \returns \herr_t * * \details H5Pset_dxpl_mpio() sets the data transfer property list \p dxpl_id * to use transfer mode \p xfer_mode. The property list can then be * used to control the I/O transfer mode during data I/O operations. * * Valid transfer modes are #H5FD_MPIO_INDEPENDENT (default) and * #H5FD_MPIO_COLLECTIVE. * * \since 1.4.0 * */ H5_DLL herr_t H5Pset_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t xfer_mode); /** * \ingroup DXPL * * \brief Returns the data transfer mode * * \dxpl_id * \param[out] xfer_mode Transfer mode * \returns \herr_t * * \details H5Pget_dxpl_mpio() queries the data transfer mode currently set in * the data transfer property list \p dxpl_id. * * Upon return, \p xfer_mode contains the data transfer mode, if it is * non-null. * * H5Pget_dxpl_mpio() is not a collective function. * * \since 1.4.0 * */ H5_DLL herr_t H5Pget_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t *xfer_mode /*out*/); /** * \ingroup DXPL * * \brief Sets low-level data transfer mode * * \dxpl_id * \param[in] opt_mode Transfer mode * \returns \herr_t * * \details H5Pset_dxpl_mpio_collective_opt() sets the data transfer property * list \p dxpl_id to use transfer mode \p opt_mode when performing * I/O. This allows the application to specify collective I/O at the * HDF5 interface level (with the H5Pset_dxpl_mpio() API routine), * while controlling whether the actual I/O is performed collectively * (e.g., via MPI_File_write_at_all) or independently (e.g., via * MPI_File_write_at). If the collectivity setting at the HDF5 * interface level (set via H5Pset_dxpl_mpio()) is not set to * H5FD_MPIO_COLLECTIVE, this setting will be ignored. * * Valid transfer modes are #H5FD_MPIO_COLLECTIVE_IO (default) and * #H5FD_MPIO_INDIVIDUAL_IO. * * \since 1.4.0 * */ H5_DLL herr_t H5Pset_dxpl_mpio_collective_opt(hid_t dxpl_id, H5FD_mpio_collective_opt_t opt_mode); /** * \ingroup DXPL * * \brief Sets a flag specifying linked-chunk I/O or multi-chunk I/O * * \dxpl_id * \param[in] opt_mode Transfer mode * \returns \herr_t * * \details H5Pset_dxpl_mpio_chunk_opt() specifies whether I/O is to be * performed as linked-chunk I/O or as multi-chunk I/O. This function * overrides the HDF5 library's internal algorithm for determining * which mechanism to use. * * When an application uses collective I/O with chunked storage, the * HDF5 library normally uses an internal algorithm to determine * whether that I/O activity should be conducted as one linked-chunk * I/O or as multi-chunk I/O. H5Pset_dxpl_mpio_chunk_opt() is provided * so that an application can override the library's algorithm in * circumstances where the library might lack the information needed to * make an optimal decision. * * H5Pset_dxpl_mpio_chunk_opt() works by setting one of the following * flags in the parameter \p opt_mode: * - #H5FD_MPIO_CHUNK_ONE_IO - Do one-link chunked I/O * - #H5FD_MPIO_CHUNK_MULTI_IO - Do multi-chunked I/O * * This function works by setting a corresponding property in the * dataset transfer property list \p dxpl_id. * * The library performs I/O in the specified manner unless it * determines that the low-level MPI IO package does not support the * requested behavior; in such cases, the HDF5 library will internally * use independent I/O. * * Use of this function is optional. * * \since 1.8.0 * */ H5_DLL herr_t H5Pset_dxpl_mpio_chunk_opt(hid_t dxpl_id, H5FD_mpio_chunk_opt_t opt_mode); /** * \ingroup DXPL * * \brief Sets a numeric threshold for linked-chunk I/O * * \dxpl_id * \param[in] num_chunk_per_proc * \returns \herr_t * * \details H5Pset_dxpl_mpio_chunk_opt_num() sets a numeric threshold for the * use of linked-chunk I/O. * * The library will calculate the average number of chunks selected by * each process when doing collective access with chunked storage. If * the number is greater than the threshold set in \p * num_chunk_per_proc, the library will use linked-chunk I/O; * otherwise, a separate I/O process will be invoked for each chunk * (multi-chunk I/O). * * \since 1.8.0 * */ H5_DLL herr_t H5Pset_dxpl_mpio_chunk_opt_num(hid_t dxpl_id, unsigned num_chunk_per_proc); /** * \ingroup DXPL * * \brief Sets a ratio threshold for collective I/O * * \dxpl_id * \param[in] percent_num_proc_per_chunk * \returns \herr_t * * \details H5Pset_dxpl_mpio_chunk_opt_ratio() sets a threshold for the use of * collective I/O based on the ratio of processes with collective * access to a dataset with chunked storage. The decision whether to * use collective I/O is made on a per-chunk basis. * * The library will calculate the percentage of the total number of * processes, the ratio, that hold selections in each chunk. If that * percentage is greater than the threshold set in \p * percent_proc_per_chunk, the library will do collective I/O for this * chunk; otherwise, independent I/O will be done for the chunk. * * \since 1.8.0 * */ H5_DLL herr_t H5Pset_dxpl_mpio_chunk_opt_ratio(hid_t dxpl_id, unsigned percent_num_proc_per_chunk); #ifdef __cplusplus } #endif #endif /* H5_HAVE_PARALLEL */ #endif