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// Copyright (c) 2005-2008 INRIA Sophia-Antipolis (France). // 2008 GeometryFactory // All rights reserved. // // This file is part of CGAL (www.cgal.org) // // $URL: https://github.com/CGAL/cgal/blob/v6.1/CGAL_ImageIO/include/CGAL/IO/read_vtk_image_data.h $ // $Id: include/CGAL/IO/read_vtk_image_data.h b26b07a1242 $ // SPDX-License-Identifier: LGPL-3.0-or-later OR LicenseRef-Commercial // // // Author(s) : Laurent Rineau, Pierre Alliez #ifndef CGAL_IO_READ_VTK_IMAGE_DATA_H #define CGAL_IO_READ_VTK_IMAGE_DATA_H #include #include namespace CGAL { namespace { struct VTK_to_ImageIO_type_mapper { WORD_KIND wordKind; SIGN sign; unsigned int wdim; }; static const VTK_to_ImageIO_type_mapper VTK_to_ImageIO_type[VTK_ID_TYPE] = { { WK_UNKNOWN, SGN_UNKNOWN, 0}, // 0=VTK_VOID { WK_UNKNOWN, SGN_UNKNOWN, 0}, // 1=VTK_BIT { WK_FIXED, SGN_SIGNED, 1}, // 2=VTK_CHAR { WK_FIXED, SGN_UNSIGNED, 1}, // 3=VTK_UNSIGNED_CHAR { WK_FIXED, SGN_SIGNED, 2}, // 4=VTK_SHORT { WK_FIXED, SGN_UNSIGNED, 2}, // 5=VTK_UNSIGNED_SHORT { WK_FIXED, SGN_SIGNED, 4}, // 6=VTK_INT { WK_FIXED, SGN_UNSIGNED, 4}, // 7=VTK_UNSIGNED_INT { WK_FIXED, SGN_SIGNED, 8}, // 8=VTK_LONG { WK_FIXED, SGN_UNSIGNED, 8}, // 9=VTK_UNSIGNED_LONG { WK_FLOAT, SGN_SIGNED, 4}, // 10=VTK_FLOAT { WK_FIXED, SGN_SIGNED, 8} // 11=VTK_DOUBLE }; } //end anonymous namespace namespace IO { inline Image_3 read_vtk_image_data(vtkImageData* vtk_image, Image_3::Own owning = Image_3::OWN_THE_DATA) { if(!vtk_image) return Image_3(); _image* image = ::_initImage(); const int* dims = vtk_image->GetDimensions(); const double* spacing = vtk_image->GetSpacing(); const double* offset = vtk_image->GetOrigin(); image->vectMode = VM_SCALAR; image->xdim = dims[0]; image->ydim = dims[1]; image->zdim = dims[2]; image->vdim = 1; image->vx = (spacing[0] == 0) ? 1 : spacing[0]; image->vy = (spacing[1] == 0) ? 1 : spacing[1]; image->vz = (spacing[2] == 0) ? 1 : spacing[2]; image->tx = static_cast(offset[0]); image->ty = static_cast(offset[1]); image->tz = static_cast(offset[2]); image->endianness = ::_getEndianness(); int vtk_type = vtk_image->GetScalarType(); if(vtk_type == VTK_SIGNED_CHAR) vtk_type = VTK_CHAR; if(vtk_type < 0 || vtk_type > VTK_DOUBLE) vtk_type = VTK_DOUBLE; const VTK_to_ImageIO_type_mapper& imageio_type = VTK_to_ImageIO_type[vtk_type]; image->wdim = imageio_type.wdim; image->wordKind = imageio_type.wordKind; image->sign = imageio_type.sign; const int cn = vtk_image->GetNumberOfScalarComponents(); if (!vtk_image->GetPointData() || !vtk_image->GetPointData()->GetScalars()) { ::_freeImage(image); return Image_3(); } // If there is more than a scalar per point, vtk_image->data is not immediately // interpretable in Image_3->data CGAL_assertion(owning == Image_3::OWN_THE_DATA || cn == 1); CGAL_assertion(vtk_image->GetPointData()->GetScalars()->GetNumberOfTuples() == static_cast(image->xdim*image->ydim*image->zdim)); if(owning == Image_3::OWN_THE_DATA) { std::size_t dims_n = image->xdim*image->ydim*image->zdim; image->data = ::ImageIO_alloc(dims_n * image->wdim); // std::cerr << "GetNumberOfTuples() = " << vtk_image->GetPointData()->GetScalars()->GetNumberOfTuples() << "\n" // << "components = " << cn << "\n" // << "wdim = " << image->wdim << "\n" // << "image->size() = " << dims_n << std::endl; if(cn == 1) { vtk_image->GetPointData()->GetScalars()->ExportToVoidPointer(image->data); } else { std::cerr << "Warning: input has " << cn << " components; only the value of the first component will be used." << std::endl; CGAL_assertion(cn >= 3); // if it's more than 1, it needs to be at least 3 // cast the data void pointers to make it possible to do pointer arithmetic char* src = static_cast(vtk_image->GetPointData()->GetScalars()->GetVoidPointer(0)); char* dest = static_cast(image->data); for(std::size_t i=0; iwdim because we casted to char* and not the actual data type memcpy(dest + image->wdim*i, src + cn*image->wdim*i, image->wdim); // Check that we are not discarding useful data (i.e., green & blue are identical to red) CGAL_assertion(memcmp(src + cn*image->wdim*i, src + cn*image->wdim*i + image->wdim, image->wdim) == 0); CGAL_assertion(memcmp(src + cn*image->wdim*i, src + cn*image->wdim*i + 2*image->wdim, image->wdim) == 0); } } } else { image->data = vtk_image->GetPointData()->GetScalars()->GetVoidPointer(0); } return Image_3(image, owning); } } // namespace IO #ifndef CGAL_NO_DEPRECATED_CODE using IO::read_vtk_image_data; #endif } // namespace CGAL #endif // CGAL_IO_READ_VTK_IMAGE_DATA_H